Comparing Latent Concept Formation in State Space Models and Transformers via Sparse Autoencoders

Rithin Nagaraj, Rupa Laalasa Oruganti, Prerna Subhashchandra Kunder, Ashwini M Joshi

The quadratic scaling of Transformer self-attention has driven the adoption of sub-quadratic Selective State Space Models (SSMs) like Mamba, which compress past context into a fixed-size recurrent hidden state. This strict informational bottleneck raises a foundational question for mechanistic interpretability: do SSMs and Transformers learn fundamentally distinct latent representations? In this work, we employ Sparse Autoencoders (SAEs) to conduct a large-scale, feature-level correspondence analysis between Mamba-130m and Pythia-70m over a 10-million token corpus. Contrary to hypotheses predicting widespread architectural divergence, we find no evidence of systematic representational divergence between architectures: across the observed Jaccard distribution, 99.98% of Mamba features cluster toward the upper alignment boundary, providing preliminary feature-level support for the Universality Hypothesis. We further identify and qualitatively characterize this microscopic fraction (0.02%) of diverging features, finding patterns consistent with the hypothesis that the recurrent bottleneck selectively limits the parsing of rigid syntax rather than broad semantic ontology. We…