GraphSVR: q-Space--Aware Graph-Based Slice-to-Volume Registration for Diffusion MRI

Noga Kertes, Daphna Link Sourani, Alex M. Bronstein, Moti Freiman

Diffusion-weighted imaging (DWI) remains highly vulnerable to subject motion, particularly in time-efficient protocols and in motion-prone populations. While slice-to-volume registration (SVR) can mitigate inter-slice and inter-stack misalignment, diffusion MRI introduces additional complexity due to diffusion-direction-dependent contrast and the requirement to align dozens of measurements within a common reference frame, effectively yielding a 4D registration problem. Existing approaches rely primarily on sequential modeling or pairwise similarity and often degrade under sparse gradient sampling or severe motion. We introduce GraphSVR, a q-space-aware graph-based framework for 4D SVR registration in DWI. GraphSVR represents slice groups as nodes in an acquisition-structured graph, with edges encoding temporal proximity, spatial slice geometry and diffusion encoding relationships. A graph neural network predicts globally consistent stack-wise rigid motion, optimized in a self-supervised, zero-shot manner using only an anatomical reference image, without requiring paired ground-truth motion. We evaluate GraphSVR using both fully synthetic diffusion simulations and realistic…