Source-preserving alignment for robust evidence localization in scientific PDFS

Zihao Liu, Wei Yang, Zixiao Dong, Chenshu Li, Longzhang Liu +2

Scientific information-extraction systems often return a claim with an evidence string, which users must locate in the original PDF. This is challenging because the extracted evidence and PDF text layer are different representations: line wrapping, Unicode variants, superscripts, citation markers, and fragmented items alter text sequences and geometry. We present a source-preserving alignment framework: normalize text for robust matching while preserving provenance for accurate localization. It aligns evidence with normalized page text, maps matches back to source-character spans, and renders only their geometry. When exact alignment fails, line-break-aware token alignment recovers supported spans while excluding unmatched noise. Experiments on 1,020 chemistry papers show that the framework achieves a 92.6\% quote-level automatic localization rate, compared with 43.6\% for text search and 19.1\% for a precomputed bounding-box baseline. Component ablation confirms distinct contributions from normalization and approximate token alignment, while human verification assesses the visual correctness of returned highlights. Overall, these results demonstrate that reliable evidence…