GenomeOcean Anywhere: Private WebGPU Inference for Genome MoEs

Guang Yang, Fengchen Liu

Genome foundation models are most useful where sequences are generated, yet the largest models need datacenter accelerators and a place to send private DNA. We ask whether a 15-billion-parameter genome mixture-of-experts (MoE) model can instead run on volunteers' web browsers, with the experts spread across many untrusted devices, without changing its predictions and without revealing the sequence to any single device. We build a system in which a trusted coordinator runs attention and routing while browser workers run every expert feed-forward network through hand-written WebGPU kernels, and we protect the expert inputs with real-valued Lagrange coded computing: each worker receives only a Gaussian-padded share, computes the expert's linear maps, and the coordinator decodes from any two of three workers. On GenomeOcean-MoE (8 experts, top-2 routing, 24 layers), the browser path matches native llama.cpp at every quantization level, the distributed path stays at the BF16 numerical noise floor (KL 0.0036 nats per token), and an unfitted latency model predicts decode time within 0.74% (median) under emulated wide-area links. We first show that plaintext expert inputs are not…