ProtoFlow: Prototype-Guided Flow Matching for Multivariate Time Series Forecasting

Shibo Feng, Wanjin Feng, Yang Qiu, Deheng Ye, Peilin Zhao +1

Generative modeling has shown strong promise for multivariate time mseries (MTS) forecasting, especially scale to high-dimensional settings. Diffusion-based methods achieve competitive performance but typically require many sampling steps at inference. VAE-based non-iterative forecasting frameworks have therefore emerged as an efficient alternative. Within this line of work, vector quantization (VQ) enables controllable latent space modeling by mapping multivariate series into compact discrete representations. Existing VQ-based forecasting methods, however, typically rely on autoregressive (AR) token generation, which suffers from exposure bias and training-inference mismatch. Flow matching provides an efficient non-autoregressive alternative for latent forecasting, but existing formulations usually initialize transport from a generic Gaussian prior. We instead observe that the trained VQ codebook already captures representative latent prototypes and can thus serve as a more informative prior for flow matching. Based on this insight, we propose ProtoFlow, a forecasting framework that combines vector-quantized autoencoding with Prototype-prior Flow matching. Our method first maps…