Training and Scaling Compute-Optimal Physiological Waveform Foundation Models

Pingzhi Li, Jie Peng, Shuqing Luo, Zachary Plotkin, Tianlong Chen

We investigate the scaling laws and compute-optimal training of physiological waveform foundation models (FMs). We train Aether, a family of over one hundred FMs ranging from 20M to 2.1B parameters, on up to 36.3M hours of physiological waveforms. We construct eight clinical prediction tasks from MIMIC-III and evaluate the FMs through linear probing. The 720M FM outperforms all existing baseline FMs across all eight tasks. A scaling law of model size, pretraining hours, and labeled patients predicts downstream ranking error, i.e. $1-\mathrm{AUROC}$, effectively with $0.5\%$ prediction MAE at held-out resource scales and $0.9\%$ MAE when extrapolating to 2.1B parameters. We present three findings: (1) Compute-optimal training scales both FM size and pretraining hours. Under the fitted law, a $10.0\times$ increase in compute FLOPs scales model size by $1.2\times$ and pretraining hours by $8.2\times$. (2) Larger FMs use waveform data more efficiently, and greater pretraining exposure increases the benefit of model scaling. Starting from 25M parameters and 4.8M pretraining hours, doubling FM size reduces the predicted hours needed for the same performance by $51.8\%$. (3) Pretraining…