The Loss or the Architecture? What Matters in Survival Analysis with Competing Risks

Julie Alberge, Gaël Varoquaux, Judith Abécassis

Often, \emph{eg} in healthcare and predictive maintenance, what matters is which of several competing causes will strike first, and with what probability: survival analysis with competing risks. Corresponding deep learning methods are developed as bundles: a new architecture together with a new training loss, tested on one to five datasets against a handful of baselines. Thus, a state-of-the-art result cannot be attributed to the architecture, the loss, or the evaluation protocol. The coupling is not accidental: with one incidence curve per cause, a network's head is tied to the losses expressible on it. We vary the two axes independently, three losses, two of them strictly proper, on four backbones, across two modalities that tease the axes apart: 20 tabular and 3 pathology-image datasets. One loss wins in both: modelling cumulative incidence directly under censoring weighting. It brings twice as much as benefits a good choice of backbone on competing-risks data, and no more than it on single-event data: the loss is decisive for competing risks. The backbone matters too, and must match the modality: tabular networks lead on tables, pretrained vision encoders on images. The two…