How Finely Can Vision-Language Models See Biology? Bio-VQA: A Benchmark for Taxonomic, Morphological, Spatial and Individual Reasoning

S M Rayeed, Qian Ma, Charles V. Stewart, Yao Ma

In biodiversity monitoring, a single image raises several questions: which taxon, how many, which trait, and whether the individual has been seen before. Vision-language models (VLMs) could answer all of these from the image, but their ability is largely untested in biology, as existing benchmarks focus mostly on species identification within a few taxonomic groups. We present Bio-VQA, the largest biological visual question answering (VQA) benchmark and the only one to span four aspects of biological visual understanding: hierarchical taxonomic reasoning, fine-grained attribute grounding, quantitative spatial reasoning, and individual re-identification. Bio-VQA contains 1.86M questions over 217K images from 11 public datasets, and extends right-or-wrong scoring to graded scoring, so a near-miss counts for more than a distant one. Evaluating 18 open-weight models from 3.75B to 38.4B parameters, we find that general visual capabilities do not transfer to biological organisms: the best model counts animals exactly on 41.7% of images with 2 to 10 individuals, less than half its accuracy on everyday objects at the same counts. Taxonomic accuracy falls to one sixth, from 0.72 at phylum…